fix: exclude local files

Author: ewan-escience

.github/PULL_REQUEST_TEMPLATE

@@ -18,5 +18,5 @@ Feel free to remove what is not applicable.
 
 ## ALL contributions
 - [ ] I previewed my changes locally using e.g. `python3 -m http.server 4000` and confirmed they work correctly.
-- [ ] I checked for broken links, e.g. using the link checker GitHub Action workflow, or locally by using ``docker run --init --rm -it --entrypoint '' -v `pwd`:/docs lycheeverse/lychee /bin/bash -c 'cd /docs && chmod +x ./preprocess-lychee.sh && lychee ./ --config=./lychee.toml'``, at least for the files I changed.
+- [ ] I checked for broken links, e.g. using the link checker GitHub Action workflow, or locally by using ``docker run --init --rm -it -v `pwd`:/docs lycheeverse/lychee /docs --config=docs/lychee.toml``, at least for the files I changed.
 - [ ] My name was added to the `CITATION.cff` file.

.github/workflows/link-checker-pr.yml

@@ -35,4 +35,4 @@ jobs:
       - name: Check all this file's additions for broken links
         run: |
           export base_sha=$(git rev-parse ${{ github.sha }}^)
-          git diff -U0 ${base_sha} ${{ github.event.pull_request.head.sha }} -- ${{ matrix.file }} | grep -v "+++" | grep "^+" | cut -c 2- | ./lychee --exclude nlesc.sharepoint.com --exclude support.posit.co --exclude www.intel.com --exclude reddit.com --exclude jsfiddle.net -
+          git diff -U0 ${base_sha} ${{ github.event.pull_request.head.sha }} -- ${{ matrix.file }} | grep -v "+++" | grep "^+" | cut -c 2- | ./lychee --config=lychee.toml --exclude nlesc.sharepoint.com --exclude support.posit.co --exclude www.intel.com --exclude reddit.com --exclude jsfiddle.net -

.github/workflows/link-checker.yml

@@ -16,7 +16,7 @@ jobs:
         id: lychee
         with:
           # note: args has a long default value; when you override it, make sure you don't accidentally forget to include the default options you want! see https://github.com/lycheeverse/lychee-action/blob/master/action.yml
-          args: --verbose --no-progress './**/*.md' './**/*.html' './**/*.rst' --accept '100..=103,200..=299, 429' --exclude nlesc.sharepoint.com --exclude support.posit.co --exclude www.intel.com --exclude reddit.com --exclude jsfiddle.net
+          args: --verbose --no-progress './**/*.md' './**/*.html' './**/*.rst' --config=lychee.toml --accept '100..=103,200..=299, 429' --exclude nlesc.sharepoint.com --exclude support.posit.co --exclude www.intel.com --exclude reddit.com --exclude jsfiddle.net
         env:
           # This token is included to avoid github.com requests to error out with status 429 (too many requests). It only works for GitHub requests (also other GitHub REST API calls), not for the rest of the web.
           GITHUB_TOKEN: ${{secrets.TOKEN_GITHUB}}

lychee.toml

@@ -5,4 +5,5 @@ include_mail = false
 no_progress = true
 verbose = "info"
 root_dir = "./"
-preprocess = { command = "./preprocess-lychee.sh" }
+#preprocess = { command = "./preprocess-lychee.sh" }
+scheme = ["https", "http"]