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Merge pull request #78 from LukaszSztukiewicz/25-implementation-of-topological-torsion-fingerprint
25 implementation of topological torsion fingerprint
2 parents 4575eee + 40f2303 commit c2fffad

4 files changed

Lines changed: 503 additions & 156 deletions

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src/MolecularFingerprints.jl

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@@ -47,7 +47,7 @@ using MolecularGraph:
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using Random: rand, randstring, seed!, MersenneTwister
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using RDKitMinimalLib: smiles
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using SHA: sha1
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using SparseArrays: sparse, spzeros, SparseVector
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using SparseArrays: sparse, spzeros, SparseVector, findnz
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using StatsBase: sample
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# NOTE: In Julia, order of includes matters for dependencies
@@ -65,7 +65,7 @@ include("algorithms/maccs.jl")
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include("algorithms/torsions.jl")
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export AbstractCalculator, AbstractFingerprint, AbstractDescriptor
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export MACCS, TopologicalTorsion, MHFP, ECFP
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export MACCS, TopologicalTorsion, TopologicalTorsionHashed, TopologicalTorsionHashedAsBitVec, MHFP, ECFP
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export tanimoto_similarity
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export fingerprint
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