DESCRIPTION

Package: ichorCNA
Type: Package
Title: A tool for estimating the fraction of tumor in ultra-low-pass whole genome sequencing (ULP-WGS) of cell-free DNA
Version: 0.5.1
Date: 2024-02-05
Author: Gavin Ha, 
Maintainer: Gavin Ha <gha@fredhutch.org>
Depends: R (>= 4.2)
biocViews:
Imports:
  HMMcopy (>= 1.40),
  GenomicRanges (>= 1.50.2),
  GenomeInfoDb (>= 1.34.9),
  doMC (>= 1.3.8),
  foreach (>= 1.5.2),
  BSgenome.Hsapiens.UCSC.hg19 (>= 1.4.3),
  BSgenome.Hsapiens.UCSC.hg38 (>= 1.4.5),
  ggplot2 (>= 3.4.3),
  stringr (>= 1.5.0),
  data.table (>= 1.14),
  plyr (>= 1.8)
Description: A tool for estimating the fraction of tumor in ultra-low-pass whole genome sequencing (ULP-WGS) of cell-free DNA.
License: GPL-3
URL: https://github.com/GavinHaLab/ichorCNA/
RoxygenNote: 7.1.2