rnadvisor/docker-compose.yaml at v2 · EvryRNA/rnadvisor · GitHub

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services:
  tb_mcq:
    build:
      context: .
      dockerfile: dockerfiles/tb_mcq.dockerfile
    image: tb_mcq_image
    container_name: tb_mcq_container
  clash:
    build:
      context: .
      dockerfile: dockerfiles/clash.dockerfile
    image: clash_image
    container_name: clash_container
  pamnet:
    build:
      context: .
      dockerfile: dockerfiles/pamnet.dockerfile
    image: pamnet_image
    container_name: pamnet_container
  lociparse:
    build:
      context: .
      dockerfile: dockerfiles/lociparse.dockerfile
    image: lociparse_image
    container_name: lociparse_container
  3drnascore:
    build:
      context: .
      dockerfile: dockerfiles/rnascore.dockerfile
    image: 3drnascore_image
    container_name: 3drnascore_container
  barnaba:
    build:
      context: .
      dockerfile: dockerfiles/barnaba.dockerfile
    image: barnaba_image
    container_name: barnaba_container
  cgrnasp:
    build:
      context: .
      dockerfile: dockerfiles/cgrnasp.dockerfile
    image: cgrnasp_image
    container_name: cgrnasp_container
  dfire:
    build:
      context: .
      dockerfile: dockerfiles/dfire.dockerfile
    image: dfire_image
    container_name: dfire_container
  mcq:
    build:
      context: .
      dockerfile: dockerfiles/mcq.dockerfile
      target: mcq
    image: mcq_image
    container_name: mcq_container
  lcs:
    build:
      context: .
      dockerfile: dockerfiles/mcq.dockerfile
      target: lcs
    image: lcs_image
    container_name: lcs_container
  lddt:
    build:
      context: .
      dockerfile: dockerfiles/ost.dockerfile
    image: lddt_image
    container_name: lddt_container
  rasp:
    build:
      context: .
      dockerfile: dockerfiles/rasp.dockerfile
    image: rasp_image
    container_name: rasp_container
  rs_rnasp:
    build:
      context: .
      dockerfile: dockerfiles/rs_rnasp.dockerfile
    image: rs_rnasp_image
    container_name: rs_rnasp_container
  rmsd:
    build:
      context: .
      dockerfile: dockerfiles/rna_tools.dockerfile
      target: rmsd
    image: rmsd_image
    container_name: rmsd_image
  inf:
    build:
      context: .
      dockerfile: dockerfiles/rna_tools.dockerfile
      target: inf
    image: inf_image
    container_name: inf_image
  di:
    build:
      context: .
      dockerfile: dockerfiles/rna_tools.dockerfile
      target: di
    image: di_image
    container_name: di_image
  p_value:
    build:
      context: .
      dockerfile: dockerfiles/rna_tools.dockerfile
      target: p_value
    image: p_value_image
    container_name: p_value_image
  tm_score:
    build:
      context: .
      dockerfile: dockerfiles/zhanggroup.dockerfile
      target: tm_score
    image: tm_score_image
    container_name: tm_score_image
  gdt_ts:
    build:
      context: .
      dockerfile: dockerfiles/zhanggroup.dockerfile
      target: gdt_ts
    image: gdt_ts_image
    container_name: gdt_ts_image
  cad_score:
    build:
      context: .
      dockerfile: dockerfiles/voronota.dockerfile
    image: cad_score_image
    container_name: cad_score_image
  ares:
    build:
      context: .
      dockerfile: dockerfiles/ares.dockerfile
    image: ares_image
    container_name: ares_image
  rna3dcnn:
    build:
      context: .
      dockerfile: dockerfiles/rna3dcnn.dockerfile
    image: rna3dcnn_image
    container_name: rna3dcnn_image
    runtime: nvidia
    environment:
      - NVIDIA_VISIBLE_DEVICES=all
  rna_briq:
    build:
      context: .
      dockerfile: dockerfiles/rna_briq.dockerfile
    image: rna_briq_image
    container_name: rna_briq_image