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1224 lines (1116 loc) · 176 KB
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Query Protein: A0A009I3Y5
N = 31 (Note: BLAST επέστρεψε 31 hits, το Recall υπολογίζεται με N = 31)
[1] Συνοπτική σύγκριση μεθόδων
----------------------------------------------------------------------
Method | Time/query (s) | QPS | Recall@N vs BLAST Top-N
----------------------------------------------------------------------
Euclidean LSH | 0.002 | 452.9 | 0.00
Hypercube | 0.002 | 439.1 | 0.03
IVF-Flat | 0.002 | 576.6 | 0.03
IVF-PQ | 0.001 | 803.4 | 0.00
Neural LSH | 0.000 | 2101.1 | 0.03
Brute Force | 0.003 | 363.0 | 0.00
BLAST (Ref) | 0.288 | 3.5 | 1.00 (ορίζει το Top-N)
----------------------------------------------------------------------
[2] Top-N γείτονες ανά μέθοδο (εδώ π.χ. N = 10 για εκτύπωση)
Method: Euclidean LSH
Rank | Neighbor ID | L2 Dist | BLAST Identity | In BLAST Top-N? | Bio comment
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1 | sp|Q4QLU9|RLMC_HAEI8 | 1.91 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
2 | sp|Q8E9R5|UBIB_SHEON | 2.01 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
3 | sp|Q6C2A3|BUD32_YARLI | 2.02 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
4 | sp|A1SW96|MNMC_PSYIN | 2.02 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
5 | sp|P44150|Y1273_HAEIN | 2.03 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
6 | sp|Q8EIL1|RSMC_SHEON | 2.03 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
7 | sp|A3D8E4|RSMC_SHEB5 | 2.06 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
8 | sp|B0VRJ4|RSMC_ACIBS | 2.06 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
9 | sp|B6EL06|RSMC_ALISL | 2.08 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
10 | sp|B8ECC0|TPMT_SHEB2 | 2.10 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
Method: Hypercube
Rank | Neighbor ID | L2 Dist | BLAST Identity | In BLAST Top-N? | Bio comment
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1 | sp|P14181|LICA2_HAEIF | 1.69 | -- | No | Remote homolog? (no BLAST; κοινό InterPro)
2 | sp|B2J946|SASA_NOSP7 | 2.01 | -- | No | Remote homolog? (no BLAST; κοινό GO)
3 | sp|Q8E9R5|UBIB_SHEON | 2.01 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
4 | sp|Q6C2A3|BUD32_YARLI | 2.02 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
5 | sp|P33800|PG187_VAR67 | 2.03 | -- | No | Remote homolog? (no BLAST; κοινή Pfam; κοινό InterPro; κοινό GO)
6 | sp|P24362|KRB2_VACCW | 2.03 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
7 | sp|Q87PM1|KT3K_VIBPA | 2.04 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
8 | sp|Q9J523|V212_FOWPN | 2.05 | -- | No | Remote homolog? (no BLAST; κοινή Pfam; κοινό InterPro; κοινό GO)
9 | sp|C1EQQ8|MTNK_BACC3 | 2.06 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
10 | sp|B9IWP6|MTNK_BACCQ | 2.08 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
Method: IVF-Flat
Rank | Neighbor ID | L2 Dist | BLAST Identity | In BLAST Top-N? | Bio comment
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1 | sp|P14181|LICA2_HAEIF | 1.69 | -- | No | Remote homolog? (no BLAST; κοινό InterPro)
2 | sp|A5UG81|KDKA_HAEIG | 1.75 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
3 | sp|P44033|Y665_HAEIN | 1.86 | -- | No | Remote homolog? (no BLAST; κοινό GO)
4 | sp|Q4QLU9|RLMC_HAEI8 | 1.91 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
5 | sp|A9KYL6|UBIB_SHEB9 | 1.99 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
6 | sp|Q8EKA0|SELU_SHEON | 1.99 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
7 | sp|Q7MHY6|RSMC_VIBVY | 2.00 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
8 | sp|B2J946|SASA_NOSP7 | 2.01 | -- | No | Remote homolog? (no BLAST; κοινό GO)
9 | sp|Q8E9R5|UBIB_SHEON | 2.01 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
10 | sp|Q6C2A3|BUD32_YARLI | 2.02 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
Method: IVF-PQ
Rank | Neighbor ID | L2 Dist | BLAST Identity | In BLAST Top-N? | Bio comment
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1 | sp|A5UG81|KDKA_HAEIG | 1.95 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
2 | sp|P14181|LICA2_HAEIF | 1.96 | -- | No | Remote homolog? (no BLAST; κοινό InterPro)
3 | sp|A3D8E4|RSMC_SHEB5 | 2.07 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
4 | sp|A1SW96|MNMC_PSYIN | 2.10 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
5 | sp|Q9CPH1|RLMC_PASMU | 2.11 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
6 | sp|Q087P4|TRMN6_SHEFN | 2.11 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
7 | sp|Q8EIL1|RSMC_SHEON | 2.12 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
8 | sp|Q4QLU9|RLMC_HAEI8 | 2.12 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
9 | sp|Q87PM1|KT3K_VIBPA | 2.12 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
10 | sp|Q7VP87|RSMC_HAEDU | 2.13 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
Method: Neural LSH
Rank | Neighbor ID | L2 Dist | BLAST Identity | In BLAST Top-N? | Bio comment
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1 | sp|P14181|LICA2_HAEIF | 1.69 | -- | No | Remote homolog? (no BLAST; κοινό InterPro)
2 | sp|A5UG81|KDKA_HAEIG | 1.75 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
3 | sp|P44033|Y665_HAEIN | 1.86 | -- | No | Remote homolog? (no BLAST; κοινό GO)
4 | sp|A9KYL6|UBIB_SHEB9 | 1.99 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
5 | sp|Q8E9R5|UBIB_SHEON | 2.01 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
6 | sp|Q6C2A3|BUD32_YARLI | 2.02 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
7 | sp|P33800|PG187_VAR67 | 2.03 | -- | No | Remote homolog? (no BLAST; κοινή Pfam; κοινό InterPro; κοινό GO)
8 | sp|P24362|KRB2_VACCW | 2.03 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
9 | sp|Q87PM1|KT3K_VIBPA | 2.04 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
10 | sp|Q9J523|V212_FOWPN | 2.05 | -- | No | Remote homolog? (no BLAST; κοινή Pfam; κοινό InterPro; κοινό GO)
Method: Brute Force
Rank | Neighbor ID | L2 Dist | BLAST Identity | In BLAST Top-N? | Bio comment
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1 | sp|P14181|LICA2_HAEIF | 1.69 | -- | No | Remote homolog? (no BLAST; κοινό InterPro)
2 | sp|A5UG81|KDKA_HAEIG | 1.75 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
3 | sp|P44033|Y665_HAEIN | 1.86 | -- | No | Remote homolog? (no BLAST; κοινό GO)
4 | sp|Q4QLU9|RLMC_HAEI8 | 1.91 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
5 | sp|A9KYL6|UBIB_SHEB9 | 1.99 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
6 | sp|Q8EKA0|SELU_SHEON | 1.99 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
7 | sp|Q7MHY6|RSMC_VIBVY | 2.00 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
8 | sp|B2J946|SASA_NOSP7 | 2.01 | -- | No | Remote homolog? (no BLAST; κοινό GO)
9 | sp|Q8E9R5|UBIB_SHEON | 2.01 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
10 | sp|Q6C2A3|BUD32_YARLI | 2.02 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
Query Protein: A0A009PCK4
N = 29 (Note: BLAST επέστρεψε 29 hits, το Recall υπολογίζεται με N = 29)
[1] Συνοπτική σύγκριση μεθόδων
----------------------------------------------------------------------
Method | Time/query (s) | QPS | Recall@N vs BLAST Top-N
----------------------------------------------------------------------
Euclidean LSH | 0.002 | 452.9 | 0.00
Hypercube | 0.002 | 439.1 | 0.03
IVF-Flat | 0.002 | 576.6 | 0.03
IVF-PQ | 0.001 | 803.4 | 0.00
Neural LSH | 0.000 | 2101.1 | 0.03
Brute Force | 0.003 | 363.0 | 0.03
BLAST (Ref) | 0.288 | 3.5 | 1.00 (ορίζει το Top-N)
----------------------------------------------------------------------
[2] Top-N γείτονες ανά μέθοδο (εδώ π.χ. N = 10 για εκτύπωση)
Method: Euclidean LSH
Rank | Neighbor ID | L2 Dist | BLAST Identity | In BLAST Top-N? | Bio comment
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1 | sp|Q4QLU9|RLMC_HAEI8 | 1.91 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
2 | sp|Q6C2A3|BUD32_YARLI | 2.00 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
3 | sp|Q8E9R5|UBIB_SHEON | 2.01 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
4 | sp|A1SW96|MNMC_PSYIN | 2.02 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
5 | sp|P44150|Y1273_HAEIN | 2.02 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
6 | sp|Q8EIL1|RSMC_SHEON | 2.05 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
7 | sp|A3D8E4|RSMC_SHEB5 | 2.06 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
8 | sp|B0VRJ4|RSMC_ACIBS | 2.07 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
9 | sp|B6EL06|RSMC_ALISL | 2.08 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
10 | sp|Q6G4C4|KHSE_BARHE | 2.09 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
Method: Hypercube
Rank | Neighbor ID | L2 Dist | BLAST Identity | In BLAST Top-N? | Bio comment
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1 | sp|P14181|LICA2_HAEIF | 1.67 | -- | No | Remote homolog? (no BLAST; κοινό InterPro)
2 | sp|Q6C2A3|BUD32_YARLI | 2.00 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
3 | sp|P24362|KRB2_VACCW | 2.00 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
4 | sp|B2J946|SASA_NOSP7 | 2.00 | -- | No | Remote homolog? (no BLAST; κοινό GO)
5 | sp|Q8E9R5|UBIB_SHEON | 2.01 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
6 | sp|P33800|PG187_VAR67 | 2.02 | -- | No | Remote homolog? (no BLAST; κοινή Pfam; κοινό InterPro; κοινό GO)
7 | sp|Q9J523|V212_FOWPN | 2.03 | -- | No | Remote homolog? (no BLAST; κοινή Pfam; κοινό InterPro; κοινό GO)
8 | sp|Q87PM1|KT3K_VIBPA | 2.04 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
9 | sp|C1EQQ8|MTNK_BACC3 | 2.04 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
10 | sp|B0BBT2|PKND_CHLTB | 2.06 | 33% | Yes | --
Method: IVF-Flat
Rank | Neighbor ID | L2 Dist | BLAST Identity | In BLAST Top-N? | Bio comment
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1 | sp|P14181|LICA2_HAEIF | 1.67 | -- | No | Remote homolog? (no BLAST; κοινό InterPro)
2 | sp|A5UG81|KDKA_HAEIG | 1.72 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
3 | sp|P44033|Y665_HAEIN | 1.84 | -- | No | Remote homolog? (no BLAST; κοινό GO)
4 | sp|Q4QLU9|RLMC_HAEI8 | 1.91 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
5 | sp|A9KYL6|UBIB_SHEB9 | 1.98 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
6 | sp|Q8EKA0|SELU_SHEON | 1.99 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
7 | sp|Q6C2A3|BUD32_YARLI | 2.00 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
8 | sp|P24362|KRB2_VACCW | 2.00 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
9 | sp|B2J946|SASA_NOSP7 | 2.00 | -- | No | Remote homolog? (no BLAST; κοινό GO)
10 | sp|Q7MHY6|RSMC_VIBVY | 2.01 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
Method: IVF-PQ
Rank | Neighbor ID | L2 Dist | BLAST Identity | In BLAST Top-N? | Bio comment
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1 | sp|A5UG81|KDKA_HAEIG | 1.94 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
2 | sp|P14181|LICA2_HAEIF | 1.95 | -- | No | Remote homolog? (no BLAST; κοινό InterPro)
3 | sp|A3D8E4|RSMC_SHEB5 | 2.08 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
4 | sp|A1SW96|MNMC_PSYIN | 2.10 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
5 | sp|Q4QLU9|RLMC_HAEI8 | 2.11 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
6 | sp|Q87PM1|KT3K_VIBPA | 2.12 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
7 | sp|Q087P4|TRMN6_SHEFN | 2.12 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
8 | sp|Q9CPH1|RLMC_PASMU | 2.12 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
9 | sp|Q7MHY6|RSMC_VIBVY | 2.13 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
10 | sp|Q8EIL1|RSMC_SHEON | 2.13 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
Method: Neural LSH
Rank | Neighbor ID | L2 Dist | BLAST Identity | In BLAST Top-N? | Bio comment
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1 | sp|P14181|LICA2_HAEIF | 1.67 | -- | No | Remote homolog? (no BLAST; κοινό InterPro)
2 | sp|A5UG81|KDKA_HAEIG | 1.72 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
3 | sp|P44033|Y665_HAEIN | 1.84 | -- | No | Remote homolog? (no BLAST; κοινό GO)
4 | sp|A9KYL6|UBIB_SHEB9 | 1.98 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
5 | sp|Q6C2A3|BUD32_YARLI | 2.00 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
6 | sp|P24362|KRB2_VACCW | 2.00 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
7 | sp|Q8E9R5|UBIB_SHEON | 2.01 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
8 | sp|P33800|PG187_VAR67 | 2.02 | -- | No | Remote homolog? (no BLAST; κοινή Pfam; κοινό InterPro; κοινό GO)
9 | sp|Q9J523|V212_FOWPN | 2.03 | -- | No | Remote homolog? (no BLAST; κοινή Pfam; κοινό InterPro; κοινό GO)
10 | sp|Q87PM1|KT3K_VIBPA | 2.04 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
Method: Brute Force
Rank | Neighbor ID | L2 Dist | BLAST Identity | In BLAST Top-N? | Bio comment
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1 | sp|P14181|LICA2_HAEIF | 1.67 | -- | No | Remote homolog? (no BLAST; κοινό InterPro)
2 | sp|A5UG81|KDKA_HAEIG | 1.72 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
3 | sp|P44033|Y665_HAEIN | 1.84 | -- | No | Remote homolog? (no BLAST; κοινό GO)
4 | sp|Q4QLU9|RLMC_HAEI8 | 1.91 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
5 | sp|A9KYL6|UBIB_SHEB9 | 1.98 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
6 | sp|Q8EKA0|SELU_SHEON | 1.99 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
7 | sp|Q6C2A3|BUD32_YARLI | 2.00 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
8 | sp|P24362|KRB2_VACCW | 2.00 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
9 | sp|B2J946|SASA_NOSP7 | 2.00 | -- | No | Remote homolog? (no BLAST; κοινό GO)
10 | sp|Q7MHY6|RSMC_VIBVY | 2.01 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
Query Protein: A0A001
N = 50 (μέγεθος λίστας Top-N για την αξιολόγηση Recall@N)
[1] Συνοπτική σύγκριση μεθόδων
----------------------------------------------------------------------
Method | Time/query (s) | QPS | Recall@N vs BLAST Top-N
----------------------------------------------------------------------
Euclidean LSH | 0.002 | 452.9 | 0.38
Hypercube | 0.002 | 439.1 | 0.40
IVF-Flat | 0.002 | 576.6 | 0.20
IVF-PQ | 0.001 | 803.4 | 0.14
Neural LSH | 0.000 | 2101.1 | 0.42
Brute Force | 0.003 | 363.0 | 0.20
BLAST (Ref) | 0.288 | 3.5 | 1.00 (ορίζει το Top-N)
----------------------------------------------------------------------
[2] Top-N γείτονες ανά μέθοδο (εδώ π.χ. N = 10 για εκτύπωση)
Method: Euclidean LSH
Rank | Neighbor ID | L2 Dist | BLAST Identity | In BLAST Top-N? | Bio comment
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1 | sp|P9WQJ3|FATRP_MYCTU | 1.34 | 25% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
2 | sp|Q13BH6|NDVA_RHOPS | 1.42 | 33% | Yes | --
3 | sp|Q03024|APRD_PSEAE | 1.46 | 38% | Yes | --
4 | sp|Q20Z38|NDVA_RHOPB | 1.53 | 24% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
5 | sp|Q8P8W4|MSBA_XANCP | 1.77 | 36% | Yes | --
6 | sp|P23886|CYDC_ECOLI | 1.81 | 32% | Yes | --
7 | sp|O70595|ABCB6_RAT | 1.86 | 28% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
8 | sp|Q9NP58|ABCB6_HUMAN | 1.87 | 28% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
9 | sp|Q28433|TAP1_GORGO | 1.90 | 29% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
10 | sp|A6W3V7|RECF_KINRD | 1.94 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
Method: Hypercube
Rank | Neighbor ID | L2 Dist | BLAST Identity | In BLAST Top-N? | Bio comment
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1 | sp|P9WQJ3|FATRP_MYCTU | 1.34 | 25% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
2 | sp|Q13BH6|NDVA_RHOPS | 1.42 | 33% | Yes | --
3 | sp|Q20Z38|NDVA_RHOPB | 1.53 | 24% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
4 | sp|Q8P8W4|MSBA_XANCP | 1.77 | 36% | Yes | --
5 | sp|A3Q5L8|MPRB_MYCSJ | 1.91 | -- | No | Remote homolog? (no BLAST; κοινό GO)
6 | sp|A6W3V7|RECF_KINRD | 1.94 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
7 | sp|Q9CCJ1|MTRB_MYCLE | 1.98 | -- | No | Remote homolog? (no BLAST; κοινό GO)
8 | sp|Q2JD94|RUVB_FRACC | 2.01 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
9 | sp|Q0WML0|AB27B_ARATH | 2.03 | 37% | Yes | --
10 | sp|P9WHI9|RECF_MYCTU | 2.03 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
Method: IVF-Flat
Rank | Neighbor ID | L2 Dist | BLAST Identity | In BLAST Top-N? | Bio comment
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1 | sp|P9WQJ3|FATRP_MYCTU | 1.34 | 25% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
2 | sp|Q13BH6|NDVA_RHOPS | 1.42 | 33% | Yes | --
3 | sp|Q03024|APRD_PSEAE | 1.46 | 38% | Yes | --
4 | sp|Q20Z38|NDVA_RHOPB | 1.53 | 24% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
5 | sp|Q9ZEP3|CSEC_STRCO | 1.76 | -- | No | Remote homolog? (no BLAST; κοινό GO)
6 | sp|A0K739|SSUB1_BURCH | 1.76 | 36% | No | --
7 | sp|Q8P8W4|MSBA_XANCP | 1.77 | 36% | Yes | --
8 | sp|Q51719|YCOBA_PROFR | 1.77 | 30% | No | --
9 | sp|Q3JSR6|SSUB_BURP1 | 1.79 | 37% | No | --
10 | sp|P23886|CYDC_ECOLI | 1.81 | 32% | Yes | --
Method: IVF-PQ
Rank | Neighbor ID | L2 Dist | BLAST Identity | In BLAST Top-N? | Bio comment
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1 | sp|P9WQJ3|FATRP_MYCTU | 1.71 | 25% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
2 | sp|Q13BH6|NDVA_RHOPS | 1.75 | 33% | Yes | --
3 | sp|Q03024|APRD_PSEAE | 1.75 | 38% | Yes | --
4 | sp|Q3JSR6|SSUB_BURP1 | 1.76 | 37% | No | --
5 | sp|Q9ZEP3|CSEC_STRCO | 1.82 | -- | No | Remote homolog? (no BLAST; κοινό GO)
6 | sp|Q20Z38|NDVA_RHOPB | 1.85 | 24% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
7 | sp|A0K739|SSUB1_BURCH | 1.85 | 36% | No | --
8 | sp|A3Q5L8|MPRB_MYCSJ | 1.86 | -- | No | Remote homolog? (no BLAST; κοινό GO)
9 | sp|P9WQJ4|OPPD_MYCTO | 1.91 | 28% | No | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
10 | sp|Q51719|YCOBA_PROFR | 1.93 | 30% | No | --
Method: Neural LSH
Rank | Neighbor ID | L2 Dist | BLAST Identity | In BLAST Top-N? | Bio comment
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1 | sp|P9WQJ3|FATRP_MYCTU | 1.34 | 25% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
2 | sp|Q13BH6|NDVA_RHOPS | 1.42 | 33% | Yes | --
3 | sp|Q03024|APRD_PSEAE | 1.46 | 38% | Yes | --
4 | sp|Q20Z38|NDVA_RHOPB | 1.53 | 24% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
5 | sp|Q9ZEP3|CSEC_STRCO | 1.76 | -- | No | Remote homolog? (no BLAST; κοινό GO)
6 | sp|Q8P8W4|MSBA_XANCP | 1.77 | 36% | Yes | --
7 | sp|P23886|CYDC_ECOLI | 1.81 | 32% | Yes | --
8 | sp|O70595|ABCB6_RAT | 1.86 | 28% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
9 | sp|Q9NP58|ABCB6_HUMAN | 1.87 | 28% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
10 | sp|Q28433|TAP1_GORGO | 1.90 | 29% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
Method: Brute Force
Rank | Neighbor ID | L2 Dist | BLAST Identity | In BLAST Top-N? | Bio comment
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1 | sp|P9WQJ3|FATRP_MYCTU | 1.34 | 25% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
2 | sp|Q13BH6|NDVA_RHOPS | 1.42 | 33% | Yes | --
3 | sp|Q03024|APRD_PSEAE | 1.46 | 38% | Yes | --
4 | sp|Q20Z38|NDVA_RHOPB | 1.53 | 24% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
5 | sp|Q9ZEP3|CSEC_STRCO | 1.76 | -- | No | Remote homolog? (no BLAST; κοινό GO)
6 | sp|A0K739|SSUB1_BURCH | 1.76 | 36% | No | --
7 | sp|Q8P8W4|MSBA_XANCP | 1.77 | 36% | Yes | --
8 | sp|Q51719|YCOBA_PROFR | 1.77 | 30% | No | --
9 | sp|Q3JSR6|SSUB_BURP1 | 1.79 | 37% | No | --
10 | sp|P23886|CYDC_ECOLI | 1.81 | 32% | Yes | --
Query Protein: A0A002
N = 50 (μέγεθος λίστας Top-N για την αξιολόγηση Recall@N)
[1] Συνοπτική σύγκριση μεθόδων
----------------------------------------------------------------------
Method | Time/query (s) | QPS | Recall@N vs BLAST Top-N
----------------------------------------------------------------------
Euclidean LSH | 0.002 | 452.9 | 0.24
Hypercube | 0.002 | 439.1 | 0.32
IVF-Flat | 0.002 | 576.6 | 0.30
IVF-PQ | 0.001 | 803.4 | 0.14
Neural LSH | 0.000 | 2101.1 | 0.54
Brute Force | 0.003 | 363.0 | 0.30
BLAST (Ref) | 0.288 | 3.5 | 1.00 (ορίζει το Top-N)
----------------------------------------------------------------------
[2] Top-N γείτονες ανά μέθοδο (εδώ π.χ. N = 10 για εκτύπωση)
Method: Euclidean LSH
Rank | Neighbor ID | L2 Dist | BLAST Identity | In BLAST Top-N? | Bio comment
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1 | sp|P9WQJ3|FATRP_MYCTU | 1.33 | 28% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
2 | sp|Q13BH6|NDVA_RHOPS | 1.43 | 29% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
3 | sp|Q03024|APRD_PSEAE | 1.50 | 31% | Yes | --
4 | sp|Q20Z38|NDVA_RHOPB | 1.53 | 28% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
5 | sp|P23886|CYDC_ECOLI | 1.76 | 28% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
6 | sp|Q9NP58|ABCB6_HUMAN | 1.92 | 32% | Yes | --
7 | sp|Q0WML0|AB27B_ARATH | 2.02 | 26% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
8 | sp|A8LVH1|RECF_SALAI | 2.06 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
9 | sp|O07550|YHEI_BACSU | 2.07 | 26% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
10 | sp|P59653|COMA_STRR6 | 2.30 | 23% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
Method: Hypercube
Rank | Neighbor ID | L2 Dist | BLAST Identity | In BLAST Top-N? | Bio comment
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1 | sp|P9WQJ3|FATRP_MYCTU | 1.33 | 28% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
2 | sp|Q13BH6|NDVA_RHOPS | 1.43 | 29% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
3 | sp|Q8P8W4|MSBA_XANCP | 1.75 | 28% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
4 | sp|A6W3V7|RECF_KINRD | 1.95 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
5 | sp|Q67JX3|ECFA1_SYMTH | 1.97 | 31% | No | --
6 | sp|Q0WML0|AB27B_ARATH | 2.02 | 26% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
7 | sp|A3Q5L8|MPRB_MYCSJ | 2.03 | -- | No | Remote homolog? (no BLAST; κοινό GO)
8 | sp|P9WHI9|RECF_MYCTU | 2.04 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
9 | sp|A8LVH1|RECF_SALAI | 2.06 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
10 | sp|Q83LP0|MSBA_SHIFL | 2.07 | 25% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
Method: IVF-Flat
Rank | Neighbor ID | L2 Dist | BLAST Identity | In BLAST Top-N? | Bio comment
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1 | sp|P9WQJ3|FATRP_MYCTU | 1.33 | 28% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
2 | sp|Q13BH6|NDVA_RHOPS | 1.43 | 29% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
3 | sp|Q03024|APRD_PSEAE | 1.50 | 31% | Yes | --
4 | sp|Q20Z38|NDVA_RHOPB | 1.53 | 28% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
5 | sp|Q8P8W4|MSBA_XANCP | 1.75 | 28% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
6 | sp|P23886|CYDC_ECOLI | 1.76 | 28% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
7 | sp|Q51719|YCOBA_PROFR | 1.78 | 31% | No | --
8 | sp|Q82MV1|SSUB1_STRAW | 1.79 | 30% | No | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
9 | sp|A0K739|SSUB1_BURCH | 1.83 | 33% | No | --
10 | sp|Q28433|TAP1_GORGO | 1.85 | 27% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
Method: IVF-PQ
Rank | Neighbor ID | L2 Dist | BLAST Identity | In BLAST Top-N? | Bio comment
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1 | sp|P9WQJ3|FATRP_MYCTU | 1.75 | 28% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
2 | sp|Q13BH6|NDVA_RHOPS | 1.78 | 29% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
3 | sp|Q03024|APRD_PSEAE | 1.80 | 31% | Yes | --
4 | sp|Q3JSR6|SSUB_BURP1 | 1.82 | 33% | No | --
5 | sp|Q20Z38|NDVA_RHOPB | 1.88 | 28% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
6 | sp|Q51719|YCOBA_PROFR | 1.88 | 31% | No | --
7 | sp|Q82MV1|SSUB1_STRAW | 1.90 | 30% | No | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
8 | sp|A0K739|SSUB1_BURCH | 1.90 | 33% | No | --
9 | sp|A8LVH1|RECF_SALAI | 1.91 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
10 | sp|Q2J3T0|HMUV_RHOP2 | 1.93 | 31% | No | --
Method: Neural LSH
Rank | Neighbor ID | L2 Dist | BLAST Identity | In BLAST Top-N? | Bio comment
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1 | sp|P9WQJ3|FATRP_MYCTU | 1.33 | 28% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
2 | sp|Q13BH6|NDVA_RHOPS | 1.43 | 29% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
3 | sp|Q03024|APRD_PSEAE | 1.50 | 31% | Yes | --
4 | sp|Q20Z38|NDVA_RHOPB | 1.53 | 28% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
5 | sp|Q8P8W4|MSBA_XANCP | 1.75 | 28% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
6 | sp|P23886|CYDC_ECOLI | 1.76 | 28% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
7 | sp|Q28433|TAP1_GORGO | 1.85 | 27% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
8 | sp|O70595|ABCB6_RAT | 1.90 | 32% | Yes | --
9 | sp|Q9NP58|ABCB6_HUMAN | 1.92 | 32% | Yes | --
10 | sp|Q9ZEP3|CSEC_STRCO | 2.00 | -- | No | Remote homolog? (no BLAST; κοινό GO)
Method: Brute Force
Rank | Neighbor ID | L2 Dist | BLAST Identity | In BLAST Top-N? | Bio comment
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1 | sp|P9WQJ3|FATRP_MYCTU | 1.33 | 28% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
2 | sp|Q13BH6|NDVA_RHOPS | 1.43 | 29% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
3 | sp|Q03024|APRD_PSEAE | 1.50 | 31% | Yes | --
4 | sp|Q20Z38|NDVA_RHOPB | 1.53 | 28% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
5 | sp|Q8P8W4|MSBA_XANCP | 1.75 | 28% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
6 | sp|P23886|CYDC_ECOLI | 1.76 | 28% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
7 | sp|Q51719|YCOBA_PROFR | 1.78 | 31% | No | --
8 | sp|Q82MV1|SSUB1_STRAW | 1.79 | 30% | No | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
9 | sp|A0K739|SSUB1_BURCH | 1.83 | 33% | No | --
10 | sp|Q28433|TAP1_GORGO | 1.85 | 27% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
Query Protein: A0A009HL96
N = 50 (μέγεθος λίστας Top-N για την αξιολόγηση Recall@N)
[1] Συνοπτική σύγκριση μεθόδων
----------------------------------------------------------------------
Method | Time/query (s) | QPS | Recall@N vs BLAST Top-N
----------------------------------------------------------------------
Euclidean LSH | 0.002 | 452.9 | 0.66
Hypercube | 0.002 | 439.1 | 0.58
IVF-Flat | 0.002 | 576.6 | 0.72
IVF-PQ | 0.001 | 803.4 | 0.56
Neural LSH | 0.000 | 2101.1 | 0.72
Brute Force | 0.003 | 363.0 | 0.72
BLAST (Ref) | 0.288 | 3.5 | 1.00 (ορίζει το Top-N)
----------------------------------------------------------------------
[2] Top-N γείτονες ανά μέθοδο (εδώ π.χ. N = 10 για εκτύπωση)
Method: Euclidean LSH
Rank | Neighbor ID | L2 Dist | BLAST Identity | In BLAST Top-N? | Bio comment
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1 | sp|Q5HI09|GRAR_STAAC | 0.64 | 26% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
2 | sp|P33112|SPAR_BACIU | 0.64 | 31% | Yes | --
3 | sp|Q99VW2|GRAR_STAAN | 0.66 | 26% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
4 | sp|Q8CQ37|GRAR_STAES | 0.67 | 28% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
5 | sp|Q99RR6|HSSR_STAAM | 0.75 | 31% | Yes | --
6 | sp|Q9AE24|RPRY_BACFR | 0.78 | 28% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
7 | sp|P28257|YCF27_GALSU | 0.78 | 33% | Yes | --
8 | sp|P0CAW8|CTRA_CAUVC | 0.79 | 31% | Yes | --
9 | sp|A6WZ81|CTRA_BRUA4 | 0.85 | 33% | Yes | --
10 | sp|P45189|PHOB_HAEIN | 0.88 | 34% | Yes | --
Method: Hypercube
Rank | Neighbor ID | L2 Dist | BLAST Identity | In BLAST Top-N? | Bio comment
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1 | sp|Q5HI09|GRAR_STAAC | 0.64 | 26% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
2 | sp|P33112|SPAR_BACIU | 0.64 | 31% | Yes | --
3 | sp|Q99VW2|GRAR_STAAN | 0.66 | 26% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
4 | sp|Q8CQ37|GRAR_STAES | 0.67 | 28% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
5 | sp|Q99RR6|HSSR_STAAM | 0.75 | 31% | Yes | --
6 | sp|Q9AE24|RPRY_BACFR | 0.78 | 28% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
7 | sp|P28257|YCF27_GALSU | 0.78 | 33% | Yes | --
8 | sp|P0CAW8|CTRA_CAUVC | 0.79 | 31% | Yes | --
9 | sp|A6WZ81|CTRA_BRUA4 | 0.85 | 33% | Yes | --
10 | sp|A0A0H2UQ68|WALR_STRPN | 0.96 | 37% | Yes | --
Method: IVF-Flat
Rank | Neighbor ID | L2 Dist | BLAST Identity | In BLAST Top-N? | Bio comment
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1 | sp|Q5HI09|GRAR_STAAC | 0.64 | 26% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
2 | sp|P33112|SPAR_BACIU | 0.64 | 31% | Yes | --
3 | sp|Q99VW2|GRAR_STAAN | 0.66 | 26% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
4 | sp|Q8CQ37|GRAR_STAES | 0.67 | 28% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
5 | sp|Q99RR6|HSSR_STAAM | 0.75 | 31% | Yes | --
6 | sp|Q9AE24|RPRY_BACFR | 0.78 | 28% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
7 | sp|P28257|YCF27_GALSU | 0.78 | 33% | Yes | --
8 | sp|P0CAW8|CTRA_CAUVC | 0.79 | 31% | Yes | --
9 | sp|A6WZ81|CTRA_BRUA4 | 0.85 | 33% | Yes | --
10 | sp|P45189|PHOB_HAEIN | 0.88 | 34% | Yes | --
Method: IVF-PQ
Rank | Neighbor ID | L2 Dist | BLAST Identity | In BLAST Top-N? | Bio comment
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1 | sp|P33112|SPAR_BACIU | 1.56 | 31% | Yes | --
2 | sp|Q5HI09|GRAR_STAAC | 1.56 | 26% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
3 | sp|Q99VW2|GRAR_STAAN | 1.56 | 26% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
4 | sp|Q8CQ37|GRAR_STAES | 1.57 | 28% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
5 | sp|Q9AE24|RPRY_BACFR | 1.60 | 28% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
6 | sp|Q1XDE4|YCF29_PYRYE | 1.63 | 31% | Yes | --
7 | sp|P0A4H8|CIAR_STRR6 | 1.63 | 32% | Yes | --
8 | sp|P28257|YCF27_GALSU | 1.63 | 33% | Yes | --
9 | sp|Q99RR6|HSSR_STAAM | 1.64 | 31% | Yes | --
10 | sp|P0CAW8|CTRA_CAUVC | 1.64 | 31% | Yes | --
Method: Neural LSH
Rank | Neighbor ID | L2 Dist | BLAST Identity | In BLAST Top-N? | Bio comment
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1 | sp|Q5HI09|GRAR_STAAC | 0.64 | 26% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
2 | sp|P33112|SPAR_BACIU | 0.64 | 31% | Yes | --
3 | sp|Q99VW2|GRAR_STAAN | 0.66 | 26% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
4 | sp|Q8CQ37|GRAR_STAES | 0.67 | 28% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
5 | sp|Q99RR6|HSSR_STAAM | 0.75 | 31% | Yes | --
6 | sp|Q9AE24|RPRY_BACFR | 0.78 | 28% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
7 | sp|P28257|YCF27_GALSU | 0.78 | 33% | Yes | --
8 | sp|P0CAW8|CTRA_CAUVC | 0.79 | 31% | Yes | --
9 | sp|A6WZ81|CTRA_BRUA4 | 0.85 | 33% | Yes | --
10 | sp|P45189|PHOB_HAEIN | 0.88 | 34% | Yes | --
Method: Brute Force
Rank | Neighbor ID | L2 Dist | BLAST Identity | In BLAST Top-N? | Bio comment
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1 | sp|Q5HI09|GRAR_STAAC | 0.64 | 26% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
2 | sp|P33112|SPAR_BACIU | 0.64 | 31% | Yes | --
3 | sp|Q99VW2|GRAR_STAAN | 0.66 | 26% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
4 | sp|Q8CQ37|GRAR_STAES | 0.67 | 28% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
5 | sp|Q99RR6|HSSR_STAAM | 0.75 | 31% | Yes | --
6 | sp|Q9AE24|RPRY_BACFR | 0.78 | 28% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
7 | sp|P28257|YCF27_GALSU | 0.78 | 33% | Yes | --
8 | sp|P0CAW8|CTRA_CAUVC | 0.79 | 31% | Yes | --
9 | sp|A6WZ81|CTRA_BRUA4 | 0.85 | 33% | Yes | --
10 | sp|P45189|PHOB_HAEIN | 0.88 | 34% | Yes | --
Query Protein: A0A009HLV9
N = 50 (μέγεθος λίστας Top-N για την αξιολόγηση Recall@N)
[1] Συνοπτική σύγκριση μεθόδων
----------------------------------------------------------------------
Method | Time/query (s) | QPS | Recall@N vs BLAST Top-N
----------------------------------------------------------------------
Euclidean LSH | 0.002 | 452.9 | 0.36
Hypercube | 0.002 | 439.1 | 0.30
IVF-Flat | 0.002 | 576.6 | 0.38
IVF-PQ | 0.001 | 803.4 | 0.34
Neural LSH | 0.000 | 2101.1 | 0.38
Brute Force | 0.003 | 363.0 | 0.38
BLAST (Ref) | 0.288 | 3.5 | 1.00 (ορίζει το Top-N)
----------------------------------------------------------------------
[2] Top-N γείτονες ανά μέθοδο (εδώ π.χ. N = 10 για εκτύπωση)
Method: Euclidean LSH
Rank | Neighbor ID | L2 Dist | BLAST Identity | In BLAST Top-N? | Bio comment
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1 | sp|P28787|NTRC_PROHU | 0.57 | 63% | Yes | --
2 | sp|Q06065|ATOC_ECOLI | 0.89 | 41% | Yes | --
3 | sp|Q5E3W8|NORR_ALIF1 | 0.92 | 44% | Yes | --
4 | sp|P23747|ALGB_PSEAE | 0.95 | 40% | Yes | --
5 | sp|O87455|LUXO_VIBC3 | 0.96 | 40% | Yes | --
6 | sp|P59402|NORR_SHIFL | 0.99 | 40% | Yes | --
7 | sp|A8A3I6|NORR_ECOHS | 1.00 | 38% | Yes | --
8 | sp|B6I695|NORR_ECOSE | 1.01 | 41% | Yes | --
9 | sp|A1KU52|RUVB_NEIMF | 1.01 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
10 | sp|B7N6T9|NORR_ECOLU | 1.01 | 45% | Yes | --
Method: Hypercube
Rank | Neighbor ID | L2 Dist | BLAST Identity | In BLAST Top-N? | Bio comment
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1 | sp|P28787|NTRC_PROHU | 0.57 | 63% | Yes | --
2 | sp|Q06065|ATOC_ECOLI | 0.89 | 41% | Yes | --
3 | sp|Q5E3W8|NORR_ALIF1 | 0.92 | 44% | Yes | --
4 | sp|P23747|ALGB_PSEAE | 0.95 | 40% | Yes | --
5 | sp|P59402|NORR_SHIFL | 0.99 | 40% | Yes | --
6 | sp|A8A3I6|NORR_ECOHS | 1.00 | 38% | Yes | --
7 | sp|B6I695|NORR_ECOSE | 1.01 | 41% | Yes | --
8 | sp|A1KU52|RUVB_NEIMF | 1.01 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
9 | sp|B7N6T9|NORR_ECOLU | 1.01 | 45% | Yes | --
10 | sp|Q0TEH1|NORR_ECOL5 | 1.01 | 41% | Yes | --
Method: IVF-Flat
Rank | Neighbor ID | L2 Dist | BLAST Identity | In BLAST Top-N? | Bio comment
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1 | sp|P28787|NTRC_PROHU | 0.57 | 63% | Yes | --
2 | sp|Q06065|ATOC_ECOLI | 0.89 | 41% | Yes | --
3 | sp|Q5E3W8|NORR_ALIF1 | 0.92 | 44% | Yes | --
4 | sp|P23747|ALGB_PSEAE | 0.95 | 40% | Yes | --
5 | sp|O87455|LUXO_VIBC3 | 0.96 | 40% | Yes | --
6 | sp|P59402|NORR_SHIFL | 0.99 | 40% | Yes | --
7 | sp|A8A3I6|NORR_ECOHS | 1.00 | 38% | Yes | --
8 | sp|B6I695|NORR_ECOSE | 1.01 | 41% | Yes | --
9 | sp|A1KU52|RUVB_NEIMF | 1.01 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
10 | sp|B7N6T9|NORR_ECOLU | 1.01 | 45% | Yes | --
Method: IVF-PQ
Rank | Neighbor ID | L2 Dist | BLAST Identity | In BLAST Top-N? | Bio comment
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1 | sp|P28787|NTRC_PROHU | 1.06 | 63% | Yes | --
2 | sp|Q5E3W8|NORR_ALIF1 | 1.12 | 44% | Yes | --
3 | sp|Q15RN6|RUVB_PSEA6 | 1.14 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
4 | sp|Q06065|ATOC_ECOLI | 1.16 | 41% | Yes | --
5 | sp|O87455|LUXO_VIBC3 | 1.19 | 40% | Yes | --
6 | sp|P59402|NORR_SHIFL | 1.19 | 40% | Yes | --
7 | sp|P36219|WTSA_PANSE | 1.19 | 41% | Yes | --
8 | sp|A8A3I6|NORR_ECOHS | 1.20 | 38% | Yes | --
9 | sp|B7N6T9|NORR_ECOLU | 1.20 | 45% | Yes | --
10 | sp|B6I695|NORR_ECOSE | 1.20 | 41% | Yes | --
Method: Neural LSH
Rank | Neighbor ID | L2 Dist | BLAST Identity | In BLAST Top-N? | Bio comment
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1 | sp|P28787|NTRC_PROHU | 0.57 | 63% | Yes | --
2 | sp|Q06065|ATOC_ECOLI | 0.89 | 41% | Yes | --
3 | sp|Q5E3W8|NORR_ALIF1 | 0.92 | 44% | Yes | --
4 | sp|P23747|ALGB_PSEAE | 0.95 | 40% | Yes | --
5 | sp|O87455|LUXO_VIBC3 | 0.96 | 40% | Yes | --
6 | sp|P59402|NORR_SHIFL | 0.99 | 40% | Yes | --
7 | sp|A8A3I6|NORR_ECOHS | 1.00 | 38% | Yes | --
8 | sp|B6I695|NORR_ECOSE | 1.01 | 41% | Yes | --
9 | sp|A1KU52|RUVB_NEIMF | 1.01 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
10 | sp|B7N6T9|NORR_ECOLU | 1.01 | 45% | Yes | --
Method: Brute Force
Rank | Neighbor ID | L2 Dist | BLAST Identity | In BLAST Top-N? | Bio comment
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1 | sp|P28787|NTRC_PROHU | 0.57 | 63% | Yes | --
2 | sp|Q06065|ATOC_ECOLI | 0.89 | 41% | Yes | --
3 | sp|Q5E3W8|NORR_ALIF1 | 0.92 | 44% | Yes | --
4 | sp|P23747|ALGB_PSEAE | 0.95 | 40% | Yes | --
5 | sp|O87455|LUXO_VIBC3 | 0.96 | 40% | Yes | --
6 | sp|P59402|NORR_SHIFL | 0.99 | 40% | Yes | --
7 | sp|A8A3I6|NORR_ECOHS | 1.00 | 38% | Yes | --
8 | sp|B6I695|NORR_ECOSE | 1.01 | 41% | Yes | --
9 | sp|A1KU52|RUVB_NEIMF | 1.01 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
10 | sp|B7N6T9|NORR_ECOLU | 1.01 | 45% | Yes | --
Query Protein: A0A009HN45
N = 50 (μέγεθος λίστας Top-N για την αξιολόγηση Recall@N)
[1] Συνοπτική σύγκριση μεθόδων
----------------------------------------------------------------------
Method | Time/query (s) | QPS | Recall@N vs BLAST Top-N
----------------------------------------------------------------------
Euclidean LSH | 0.002 | 452.9 | 0.20
Hypercube | 0.002 | 439.1 | 0.02
IVF-Flat | 0.002 | 576.6 | 0.20
IVF-PQ | 0.001 | 803.4 | 0.22
Neural LSH | 0.000 | 2101.1 | 0.20
Brute Force | 0.003 | 363.0 | 0.20
BLAST (Ref) | 0.288 | 3.5 | 1.00 (ορίζει το Top-N)
----------------------------------------------------------------------
[2] Top-N γείτονες ανά μέθοδο (εδώ π.χ. N = 10 για εκτύπωση)
Method: Euclidean LSH
Rank | Neighbor ID | L2 Dist | BLAST Identity | In BLAST Top-N? | Bio comment
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1 | sp|A7MSB2|RAPA_VIBC1 | 0.68 | 36% | Yes | --
2 | sp|Q9ZDW2|UVRB_RICPR | 0.74 | -- | No | Remote homolog? (no BLAST; κοινή Pfam; κοινό InterPro; κοινό GO)
3 | sp|B0BT63|RAPA_ACTPJ | 0.76 | 34% | Yes | --
4 | sp|P52126|ABPB_ECOLI | 0.79 | -- | No | Remote homolog? (no BLAST; κοινή Pfam; κοινό InterPro; κοινό GO)
5 | sp|Q0HMR2|RAPA_SHESM | 0.79 | 23% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
6 | sp|Q0HR19|RAPA_SHESR | 0.80 | 24% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
7 | sp|Q99ZA5|UVRB_STRP1 | 0.81 | -- | No | Remote homolog? (no BLAST; κοινή Pfam; κοινό InterPro; κοινό GO)
8 | sp|Q1JBD1|UVRB_STRPB | 0.81 | -- | No | Remote homolog? (no BLAST; κοινή Pfam; κοινό InterPro; κοινό GO)
9 | sp|Q5X0E6|UVRB_LEGPL | 0.83 | -- | No | Remote homolog? (no BLAST; κοινή Pfam; κοινό InterPro; κοινό GO)
10 | sp|A6QKD8|SECA2_STAAE | 0.83 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
Method: Hypercube
Rank | Neighbor ID | L2 Dist | BLAST Identity | In BLAST Top-N? | Bio comment
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1 | sp|P0DOQ3|NTP1_VAR67 | 0.97 | 24% | No | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
2 | sp|Q6CKI1|PRP5_KLULA | 1.12 | -- | No | Remote homolog? (no BLAST; κοινή Pfam; κοινό InterPro; κοινό GO)
3 | sp|A7TJS7|SPB4_VANPO | 1.23 | -- | No | Remote homolog? (no BLAST; κοινή Pfam; κοινό InterPro; κοινό GO)
4 | sp|Q8SQM5|IF4A_ENCCU | 1.28 | -- | No | Remote homolog? (no BLAST; κοινή Pfam; κοινό InterPro; κοινό GO)
5 | sp|A3CNE1|UVRC_STRSV | 1.28 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
6 | sp|Q9VMX6|SMAL1_DROME | 1.28 | 25% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
7 | sp|P53166|MRH4_YEAST | 1.29 | -- | No | Remote homolog? (no BLAST; κοινή Pfam; κοινό InterPro; κοινό GO)
8 | sp|B5XJ75|MUTS_STRPZ | 1.32 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
9 | sp|P0DC60|MUTS_STRP3 | 1.33 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
10 | sp|Q7MPF2|CYSN_VIBVY | 1.35 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
Method: IVF-Flat
Rank | Neighbor ID | L2 Dist | BLAST Identity | In BLAST Top-N? | Bio comment
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1 | sp|A7MSB2|RAPA_VIBC1 | 0.68 | 36% | Yes | --
2 | sp|Q9ZDW2|UVRB_RICPR | 0.74 | -- | No | Remote homolog? (no BLAST; κοινή Pfam; κοινό InterPro; κοινό GO)
3 | sp|B0BT63|RAPA_ACTPJ | 0.76 | 34% | Yes | --
4 | sp|P52126|ABPB_ECOLI | 0.79 | -- | No | Remote homolog? (no BLAST; κοινή Pfam; κοινό InterPro; κοινό GO)
5 | sp|Q0HMR2|RAPA_SHESM | 0.79 | 23% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
6 | sp|Q0HR19|RAPA_SHESR | 0.80 | 24% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
7 | sp|Q99ZA5|UVRB_STRP1 | 0.81 | -- | No | Remote homolog? (no BLAST; κοινή Pfam; κοινό InterPro; κοινό GO)
8 | sp|Q1JBD1|UVRB_STRPB | 0.81 | -- | No | Remote homolog? (no BLAST; κοινή Pfam; κοινό InterPro; κοινό GO)
9 | sp|Q5X0E6|UVRB_LEGPL | 0.83 | -- | No | Remote homolog? (no BLAST; κοινή Pfam; κοινό InterPro; κοινό GO)
10 | sp|A6QKD8|SECA2_STAAE | 0.83 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
Method: IVF-PQ
Rank | Neighbor ID | L2 Dist | BLAST Identity | In BLAST Top-N? | Bio comment
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1 | sp|P52126|ABPB_ECOLI | 1.09 | -- | No | Remote homolog? (no BLAST; κοινή Pfam; κοινό InterPro; κοινό GO)
2 | sp|Q9ZDW2|UVRB_RICPR | 1.12 | -- | No | Remote homolog? (no BLAST; κοινή Pfam; κοινό InterPro; κοινό GO)
3 | sp|Q9ZKA0|UVRB_HELPJ | 1.15 | -- | No | Remote homolog? (no BLAST; κοινή Pfam; κοινό InterPro; κοινό GO)
4 | sp|A7MSB2|RAPA_VIBC1 | 1.16 | 36% | Yes | --
5 | sp|B0BT63|RAPA_ACTPJ | 1.17 | 34% | Yes | --
6 | sp|A6QKD8|SECA2_STAAE | 1.17 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
7 | sp|Q0HMR2|RAPA_SHESM | 1.17 | 23% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
8 | sp|Q1MQP3|SECA_LAWIP | 1.18 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
9 | sp|Q0HR19|RAPA_SHESR | 1.18 | 24% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
10 | sp|Q8F8A9|UVRB_LEPIN | 1.18 | -- | No | Remote homolog? (no BLAST; κοινή Pfam; κοινό InterPro; κοινό GO)
Method: Neural LSH
Rank | Neighbor ID | L2 Dist | BLAST Identity | In BLAST Top-N? | Bio comment
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1 | sp|A7MSB2|RAPA_VIBC1 | 0.68 | 36% | Yes | --
2 | sp|Q9ZDW2|UVRB_RICPR | 0.74 | -- | No | Remote homolog? (no BLAST; κοινή Pfam; κοινό InterPro; κοινό GO)
3 | sp|B0BT63|RAPA_ACTPJ | 0.76 | 34% | Yes | --
4 | sp|P52126|ABPB_ECOLI | 0.79 | -- | No | Remote homolog? (no BLAST; κοινή Pfam; κοινό InterPro; κοινό GO)
5 | sp|Q0HMR2|RAPA_SHESM | 0.79 | 23% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
6 | sp|Q0HR19|RAPA_SHESR | 0.80 | 24% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
7 | sp|Q99ZA5|UVRB_STRP1 | 0.81 | -- | No | Remote homolog? (no BLAST; κοινή Pfam; κοινό InterPro; κοινό GO)
8 | sp|Q1JBD1|UVRB_STRPB | 0.81 | -- | No | Remote homolog? (no BLAST; κοινή Pfam; κοινό InterPro; κοινό GO)
9 | sp|Q5X0E6|UVRB_LEGPL | 0.83 | -- | No | Remote homolog? (no BLAST; κοινή Pfam; κοινό InterPro; κοινό GO)
10 | sp|A6QKD8|SECA2_STAAE | 0.83 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
Method: Brute Force
Rank | Neighbor ID | L2 Dist | BLAST Identity | In BLAST Top-N? | Bio comment
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1 | sp|A7MSB2|RAPA_VIBC1 | 0.68 | 36% | Yes | --
2 | sp|Q9ZDW2|UVRB_RICPR | 0.74 | -- | No | Remote homolog? (no BLAST; κοινή Pfam; κοινό InterPro; κοινό GO)
3 | sp|B0BT63|RAPA_ACTPJ | 0.76 | 34% | Yes | --
4 | sp|P52126|ABPB_ECOLI | 0.79 | -- | No | Remote homolog? (no BLAST; κοινή Pfam; κοινό InterPro; κοινό GO)
5 | sp|Q0HMR2|RAPA_SHESM | 0.79 | 23% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
6 | sp|Q0HR19|RAPA_SHESR | 0.80 | 24% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
7 | sp|Q99ZA5|UVRB_STRP1 | 0.81 | -- | No | Remote homolog? (no BLAST; κοινή Pfam; κοινό InterPro; κοινό GO)
8 | sp|Q1JBD1|UVRB_STRPB | 0.81 | -- | No | Remote homolog? (no BLAST; κοινή Pfam; κοινό InterPro; κοινό GO)
9 | sp|Q5X0E6|UVRB_LEGPL | 0.83 | -- | No | Remote homolog? (no BLAST; κοινή Pfam; κοινό InterPro; κοινό GO)
10 | sp|A6QKD8|SECA2_STAAE | 0.83 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
Query Protein: A0A009HQC9
N = 18 (Note: BLAST επέστρεψε 18 hits, το Recall υπολογίζεται με N = 18)
[1] Συνοπτική σύγκριση μεθόδων
----------------------------------------------------------------------
Method | Time/query (s) | QPS | Recall@N vs BLAST Top-N
----------------------------------------------------------------------
Euclidean LSH | 0.002 | 452.9 | 0.67
Hypercube | 0.002 | 439.1 | 0.44
IVF-Flat | 0.002 | 576.6 | 0.67
IVF-PQ | 0.001 | 803.4 | 0.67
Neural LSH | 0.000 | 2101.1 | 0.67
Brute Force | 0.003 | 363.0 | 0.67
BLAST (Ref) | 0.288 | 3.5 | 1.00 (ορίζει το Top-N)
----------------------------------------------------------------------
[2] Top-N γείτονες ανά μέθοδο (εδώ π.χ. N = 10 για εκτύπωση)
Method: Euclidean LSH
Rank | Neighbor ID | L2 Dist | BLAST Identity | In BLAST Top-N? | Bio comment
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1 | sp|Q0HR19|RAPA_SHESR | 0.52 | 45% | Yes | --
2 | sp|Q0HMR2|RAPA_SHESM | 0.52 | 44% | Yes | --
3 | sp|A0KGL5|RAPA_AERHH | 0.52 | 45% | Yes | --
4 | sp|A1A7A6|RAPA_ECOK1 | 0.57 | 42% | Yes | --
5 | sp|A7ZW09|RAPA_ECOHS | 0.58 | 42% | Yes | --
6 | sp|B0BT63|RAPA_ACTPJ | 0.58 | 40% | Yes | --
7 | sp|A7MSB2|RAPA_VIBC1 | 0.59 | 44% | Yes | --
8 | sp|Q48LP5|RAPA_PSE14 | 0.61 | 44% | Yes | --
9 | sp|B5FI41|RAPA_SALDC | 0.61 | 42% | Yes | --
10 | sp|Q5PDF0|RAPA_SALPA | 0.61 | 42% | Yes | --
Method: Hypercube
Rank | Neighbor ID | L2 Dist | BLAST Identity | In BLAST Top-N? | Bio comment
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1 | sp|A1A7A6|RAPA_ECOK1 | 0.57 | 42% | Yes | --
2 | sp|A7ZW09|RAPA_ECOHS | 0.58 | 42% | Yes | --
3 | sp|A7MSB2|RAPA_VIBC1 | 0.59 | 44% | Yes | --
4 | sp|Q48LP5|RAPA_PSE14 | 0.61 | 44% | Yes | --
5 | sp|B5FI41|RAPA_SALDC | 0.61 | 42% | Yes | --
6 | sp|Q5PDF0|RAPA_SALPA | 0.61 | 42% | Yes | --
7 | sp|Q3KGV8|RAPA_PSEPF | 0.67 | 45% | Yes | --
8 | sp|Q9HYT6|RAPA_PSEAE | 0.75 | 46% | Yes | --
9 | sp|B7I8J5|SECA_ACIB5 | 1.16 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
10 | sp|Q21MG1|SECA_SACD2 | 1.20 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
Method: IVF-Flat
Rank | Neighbor ID | L2 Dist | BLAST Identity | In BLAST Top-N? | Bio comment
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1 | sp|Q0HR19|RAPA_SHESR | 0.52 | 45% | Yes | --
2 | sp|Q0HMR2|RAPA_SHESM | 0.52 | 44% | Yes | --
3 | sp|A0KGL5|RAPA_AERHH | 0.52 | 45% | Yes | --
4 | sp|A1A7A6|RAPA_ECOK1 | 0.57 | 42% | Yes | --
5 | sp|A7ZW09|RAPA_ECOHS | 0.58 | 42% | Yes | --
6 | sp|B0BT63|RAPA_ACTPJ | 0.58 | 40% | Yes | --
7 | sp|A7MSB2|RAPA_VIBC1 | 0.59 | 44% | Yes | --
8 | sp|Q48LP5|RAPA_PSE14 | 0.61 | 44% | Yes | --
9 | sp|B5FI41|RAPA_SALDC | 0.61 | 42% | Yes | --
10 | sp|Q5PDF0|RAPA_SALPA | 0.61 | 42% | Yes | --
Method: IVF-PQ
Rank | Neighbor ID | L2 Dist | BLAST Identity | In BLAST Top-N? | Bio comment
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1 | sp|Q0HMR2|RAPA_SHESM | 1.19 | 44% | Yes | --
2 | sp|Q0HR19|RAPA_SHESR | 1.20 | 45% | Yes | --
3 | sp|Q3KGV8|RAPA_PSEPF | 1.20 | 45% | Yes | --
4 | sp|Q48LP5|RAPA_PSE14 | 1.21 | 44% | Yes | --
5 | sp|A0KGL5|RAPA_AERHH | 1.22 | 45% | Yes | --
6 | sp|A1A7A6|RAPA_ECOK1 | 1.23 | 42% | Yes | --
7 | sp|A7ZW09|RAPA_ECOHS | 1.23 | 42% | Yes | --
8 | sp|B5FI41|RAPA_SALDC | 1.23 | 42% | Yes | --
9 | sp|Q5PDF0|RAPA_SALPA | 1.23 | 42% | Yes | --
10 | sp|B0BT63|RAPA_ACTPJ | 1.24 | 40% | Yes | --
Method: Neural LSH
Rank | Neighbor ID | L2 Dist | BLAST Identity | In BLAST Top-N? | Bio comment
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1 | sp|Q0HR19|RAPA_SHESR | 0.52 | 45% | Yes | --
2 | sp|Q0HMR2|RAPA_SHESM | 0.52 | 44% | Yes | --
3 | sp|A0KGL5|RAPA_AERHH | 0.52 | 45% | Yes | --
4 | sp|A1A7A6|RAPA_ECOK1 | 0.57 | 42% | Yes | --
5 | sp|A7ZW09|RAPA_ECOHS | 0.58 | 42% | Yes | --
6 | sp|B0BT63|RAPA_ACTPJ | 0.58 | 40% | Yes | --
7 | sp|A7MSB2|RAPA_VIBC1 | 0.59 | 44% | Yes | --
8 | sp|Q48LP5|RAPA_PSE14 | 0.61 | 44% | Yes | --
9 | sp|B5FI41|RAPA_SALDC | 0.61 | 42% | Yes | --
10 | sp|Q5PDF0|RAPA_SALPA | 0.61 | 42% | Yes | --
Method: Brute Force
Rank | Neighbor ID | L2 Dist | BLAST Identity | In BLAST Top-N? | Bio comment
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1 | sp|Q0HR19|RAPA_SHESR | 0.52 | 45% | Yes | --
2 | sp|Q0HMR2|RAPA_SHESM | 0.52 | 44% | Yes | --
3 | sp|A0KGL5|RAPA_AERHH | 0.52 | 45% | Yes | --
4 | sp|A1A7A6|RAPA_ECOK1 | 0.57 | 42% | Yes | --
5 | sp|A7ZW09|RAPA_ECOHS | 0.58 | 42% | Yes | --
6 | sp|B0BT63|RAPA_ACTPJ | 0.58 | 40% | Yes | --
7 | sp|A7MSB2|RAPA_VIBC1 | 0.59 | 44% | Yes | --
8 | sp|Q48LP5|RAPA_PSE14 | 0.61 | 44% | Yes | --
9 | sp|B5FI41|RAPA_SALDC | 0.61 | 42% | Yes | --
10 | sp|Q5PDF0|RAPA_SALPA | 0.61 | 42% | Yes | --
Query Protein: A0A009HPM0
N = 21 (Note: BLAST επέστρεψε 21 hits, το Recall υπολογίζεται με N = 21)
[1] Συνοπτική σύγκριση μεθόδων
----------------------------------------------------------------------
Method | Time/query (s) | QPS | Recall@N vs BLAST Top-N
----------------------------------------------------------------------
Euclidean LSH | 0.002 | 452.9 | 0.10
Hypercube | 0.002 | 439.1 | 0.29
IVF-Flat | 0.002 | 576.6 | 0.14
IVF-PQ | 0.001 | 803.4 | 0.05
Neural LSH | 0.000 | 2101.1 | 0.14
Brute Force | 0.003 | 363.0 | 0.14
BLAST (Ref) | 0.288 | 3.5 | 1.00 (ορίζει το Top-N)
----------------------------------------------------------------------
[2] Top-N γείτονες ανά μέθοδο (εδώ π.χ. N = 10 για εκτύπωση)
Method: Euclidean LSH
Rank | Neighbor ID | L2 Dist | BLAST Identity | In BLAST Top-N? | Bio comment
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1 | sp|Q5I0C3|MCCA_RAT | 1.29 | 47% | Yes | --
2 | sp|Q6FAM6|PURT_ACIAD | 1.44 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
3 | sp|Q88XP4|Y1151_LACPL | 1.45 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
4 | sp|Q07YK6|PURT_SHEFN | 1.46 | 27% | Yes | Remote homolog? (κοινό InterPro; κοινό GO)
5 | sp|Q5E320|RLMD_ALIF1 | 1.48 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
6 | sp|B0VRJ4|RSMC_ACIBS | 1.48 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
7 | sp|A6VLF9|TRMA_ACTSZ | 1.49 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
8 | sp|A3QHZ8|RSMC_SHELP | 1.50 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
9 | sp|B0VKL3|RLMD_ACIBS | 1.51 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
10 | sp|P57029|DNAG_NEIMB | 1.51 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
Method: Hypercube
Rank | Neighbor ID | L2 Dist | BLAST Identity | In BLAST Top-N? | Bio comment
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1 | sp|Q612F5|PCCA_CAEBR | 1.27 | 41% | Yes | --
2 | sp|Q5I0C3|MCCA_RAT | 1.29 | 47% | Yes | --
3 | sp|Q9CMJ8|RIMK_PASMU | 1.35 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
4 | sp|Q6FAM6|PURT_ACIAD | 1.44 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
5 | sp|Q07YK6|PURT_SHEFN | 1.46 | 27% | Yes | Remote homolog? (κοινό InterPro; κοινό GO)
6 | sp|P07244|PUR2_YEAST | 1.49 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
7 | sp|P21264|PUR6_YEAST | 1.52 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
8 | sp|Q8EBB7|PURT_SHEON | 1.55 | 24% | Yes | Remote homolog? (κοινό InterPro; κοινό GO)
9 | sp|A2RDW0|DDL_STRPG | 1.55 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
10 | sp|Q0HS20|PURT_SHESR | 1.55 | 24% | Yes | Remote homolog? (κοινό InterPro; κοινό GO)
Method: IVF-Flat
Rank | Neighbor ID | L2 Dist | BLAST Identity | In BLAST Top-N? | Bio comment
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1 | sp|Q612F5|PCCA_CAEBR | 1.27 | 41% | Yes | --
2 | sp|Q5I0C3|MCCA_RAT | 1.29 | 47% | Yes | --
3 | sp|Q9CMJ8|RIMK_PASMU | 1.35 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
4 | sp|B2TWG0|TRMA_SHIB3 | 1.44 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
5 | sp|Q6FAM6|PURT_ACIAD | 1.44 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
6 | sp|B1LNS5|TRMA_ECOSM | 1.45 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
7 | sp|Q88XP4|Y1151_LACPL | 1.45 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
8 | sp|A1RP91|TRMA_SHESW | 1.45 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
9 | sp|B5BJN9|TRMA_SALPK | 1.46 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
10 | sp|Q5PK68|TRMA_SALPA | 1.46 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
Method: IVF-PQ
Rank | Neighbor ID | L2 Dist | BLAST Identity | In BLAST Top-N? | Bio comment
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1 | sp|Q5I0C3|MCCA_RAT | 1.43 | 47% | Yes | --
2 | sp|A3D8E4|RSMC_SHEB5 | 1.46 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
3 | sp|Q9CMJ8|RIMK_PASMU | 1.47 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
4 | sp|P44150|Y1273_HAEIN | 1.49 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
5 | sp|B2TWG0|TRMA_SHIB3 | 1.50 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
6 | sp|P77172|PDEF_ECOLI | 1.50 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
7 | sp|Q5PK68|TRMA_SALPA | 1.50 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
8 | sp|B5BJN9|TRMA_SALPK | 1.50 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
9 | sp|P36640|ATMA_SALTY | 1.52 | -- | No | Remote homolog? (no BLAST; κοινό GO)
10 | sp|Q9CL07|GLPB_PASMU | 1.52 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
Method: Neural LSH
Rank | Neighbor ID | L2 Dist | BLAST Identity | In BLAST Top-N? | Bio comment
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1 | sp|Q6FAM6|PURT_ACIAD | 1.44 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
2 | sp|Q07YK6|PURT_SHEFN | 1.46 | 27% | Yes | Remote homolog? (κοινό InterPro; κοινό GO)
3 | sp|Q8EBB7|PURT_SHEON | 1.55 | 24% | Yes | Remote homolog? (κοινό InterPro; κοινό GO)
4 | sp|Q0HS20|PURT_SHESR | 1.55 | 24% | Yes | Remote homolog? (κοινό InterPro; κοινό GO)
5 | sp|Q1C8V8|PURT_YERPA | 1.57 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
6 | sp|P36640|ATMA_SALTY | 1.64 | -- | No | Remote homolog? (no BLAST; κοινό GO)
7 | sp|P77473|PDEB_ECOLI | 1.64 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
8 | sp|P76261|PDED_ECOLI | 1.66 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
9 | sp|P77172|PDEF_ECOLI | 1.68 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
10 | sp|Q5L8X0|REX_BACFN | 1.69 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
Method: Brute Force
Rank | Neighbor ID | L2 Dist | BLAST Identity | In BLAST Top-N? | Bio comment
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1 | sp|Q612F5|PCCA_CAEBR | 1.27 | 41% | Yes | --
2 | sp|Q5I0C3|MCCA_RAT | 1.29 | 47% | Yes | --
3 | sp|Q9CMJ8|RIMK_PASMU | 1.35 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
4 | sp|B2TWG0|TRMA_SHIB3 | 1.44 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
5 | sp|Q6FAM6|PURT_ACIAD | 1.44 | -- | No | Remote homolog? (no BLAST; κοινό InterPro; κοινό GO)
6 | sp|B1LNS5|TRMA_ECOSM | 1.45 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
7 | sp|Q88XP4|Y1151_LACPL | 1.45 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
8 | sp|A1RP91|TRMA_SHESW | 1.45 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
9 | sp|Q5PK68|TRMA_SALPA | 1.46 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
10 | sp|B5BJN9|TRMA_SALPK | 1.46 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
Query Protein: A0A009IB02
N = 11 (Note: BLAST επέστρεψε 11 hits, το Recall υπολογίζεται με N = 11)
[1] Συνοπτική σύγκριση μεθόδων
----------------------------------------------------------------------
Method | Time/query (s) | QPS | Recall@N vs BLAST Top-N
----------------------------------------------------------------------
Euclidean LSH | 0.002 | 452.9 | 0.18
Hypercube | 0.002 | 439.1 | 0.09
IVF-Flat | 0.002 | 576.6 | 0.64
IVF-PQ | 0.001 | 803.4 | 0.55
Neural LSH | 0.000 | 2101.1 | 0.64
Brute Force | 0.003 | 363.0 | 0.64
BLAST (Ref) | 0.288 | 3.5 | 1.00 (ορίζει το Top-N)
----------------------------------------------------------------------
[2] Top-N γείτονες ανά μέθοδο (εδώ π.χ. N = 10 για εκτύπωση)
Method: Euclidean LSH
Rank | Neighbor ID | L2 Dist | BLAST Identity | In BLAST Top-N? | Bio comment
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1 | sp|P10802|ODP2_AZOVI | 1.19 | 46% | Yes | --
2 | sp|P11961|ODP2_GEOSE | 1.98 | 33% | Yes | --
3 | sp|P43874|BCCP_HAEIN | 2.22 | -- | No | Remote homolog? (no BLAST; κοινή Pfam; κοινό InterPro)
4 | sp|P0ABE1|BCCP_SHIFL | 2.44 | -- | No | Remote homolog? (no BLAST; κοινή Pfam; κοινό InterPro)
5 | sp|A5TY84|PKNB_MYCTA | 2.77 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
6 | sp|P54744|PKNB_MYCLE | 2.77 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
7 | sp|A6ZQH3|HS150_YEAS7 | 2.84 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
8 | sp|B0RLE5|TONB_XANCB | 2.86 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
9 | sp|Q5AJD0|DBP5_CANAL | 2.90 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
10 | sp|B7JRB8|KDPB_BACC0 | 2.94 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
Method: Hypercube
Rank | Neighbor ID | L2 Dist | BLAST Identity | In BLAST Top-N? | Bio comment
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1 | sp|P11961|ODP2_GEOSE | 1.98 | 33% | Yes | --
2 | sp|B5XWP9|RNFC_KLEP3 | 2.56 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
3 | sp|C6DH15|RNFC_PECCP | 2.66 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
4 | sp|O32219|CADA_BACSU | 2.91 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
5 | sp|A3P6Z9|BSAZ_BURP0 | 2.94 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
6 | sp|I1WUC2|BSAZ_BURP2 | 2.94 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
7 | sp|Q9KPZ7|COPA_VIBCH | 2.95 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
8 | sp|Q62B05|BSAZ_BURMA | 2.95 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
9 | sp|B4RMZ3|IF2_NEIG2 | 2.96 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
10 | sp|P59652|FTSH_STRR6 | 2.96 | -- | No | Πιθανό false positive; No BLAST hit (no BLAST; χωρίς κοινά Pfam/IPR/GO/EC)
Method: IVF-Flat
Rank | Neighbor ID | L2 Dist | BLAST Identity | In BLAST Top-N? | Bio comment
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1 | sp|P10802|ODP2_AZOVI | 1.19 | 46% | Yes | --
2 | sp|P11961|ODP2_GEOSE | 1.98 | 33% | Yes | --
3 | sp|Q9SQI8|ODP24_ARATH | 2.01 | 29% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
4 | sp|P49786|BCCP_BACSU | 2.01 | -- | No | Remote homolog? (no BLAST; κοινή Pfam; κοινό InterPro)
5 | sp|P22439|ODPX_BOVIN | 2.19 | 25% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
6 | sp|P43874|BCCP_HAEIN | 2.22 | -- | No | Remote homolog? (no BLAST; κοινή Pfam; κοινό InterPro)
7 | sp|P29337|BCCP_STRMU | 2.29 | 38% | Yes | --
8 | sp|P02904|BCCP_PROFR | 2.35 | -- | No | Remote homolog? (no BLAST; κοινή Pfam; κοινό InterPro)
9 | sp|P0ABE1|BCCP_SHIFL | 2.44 | -- | No | Remote homolog? (no BLAST; κοινή Pfam; κοινό InterPro)
10 | sp|Q06881|BCCP_NOSS1 | 2.48 | 32% | Yes | --
Method: IVF-PQ
Rank | Neighbor ID | L2 Dist | BLAST Identity | In BLAST Top-N? | Bio comment
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1 | sp|P10802|ODP2_AZOVI | 2.14 | 46% | Yes | --
2 | sp|P43874|BCCP_HAEIN | 2.36 | -- | No | Remote homolog? (no BLAST; κοινή Pfam; κοινό InterPro)
3 | sp|P49786|BCCP_BACSU | 2.38 | -- | No | Remote homolog? (no BLAST; κοινή Pfam; κοινό InterPro)
4 | sp|P29337|BCCP_STRMU | 2.48 | 38% | Yes | --
5 | sp|P02904|BCCP_PROFR | 2.52 | -- | No | Remote homolog? (no BLAST; κοινή Pfam; κοινό InterPro)
6 | sp|P11961|ODP2_GEOSE | 2.53 | 33% | Yes | --
7 | sp|Q9SQI8|ODP24_ARATH | 2.55 | 29% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
8 | sp|Q06881|BCCP_NOSS1 | 2.56 | 32% | Yes | --
9 | sp|P22439|ODPX_BOVIN | 2.56 | 25% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
10 | sp|Q4R4J7|NUCL_MACFA | 2.60 | -- | No | Remote homolog? (no BLAST; κοινό GO)
Method: Neural LSH
Rank | Neighbor ID | L2 Dist | BLAST Identity | In BLAST Top-N? | Bio comment
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1 | sp|P10802|ODP2_AZOVI | 1.19 | 46% | Yes | --
2 | sp|P11961|ODP2_GEOSE | 1.98 | 33% | Yes | --
3 | sp|Q9SQI8|ODP24_ARATH | 2.01 | 29% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)
4 | sp|P49786|BCCP_BACSU | 2.01 | -- | No | Remote homolog? (no BLAST; κοινή Pfam; κοινό InterPro)
5 | sp|P22439|ODPX_BOVIN | 2.19 | 25% | Yes | Remote homolog? (κοινή Pfam; κοινό InterPro; κοινό GO)