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refactor: Centralize spectrum annotation and migrate to new ms2pip/ms2 APIs #604

refactor: Centralize spectrum annotation and migrate to new ms2pip/ms2 APIs

refactor: Centralize spectrum annotation and migrate to new ms2pip/ms2 APIs #604

Triggered via pull request July 9, 2026 11:28
Status Failure
Total duration 14s
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test.yml

on: pull_request
check-python-package
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4 errors and 1 warning
check-python-package
Process completed with exit code 1.
ruff (F401): ms2rescore/parse_spectra.py#L10
ms2rescore/parse_spectra.py:10:27: F401 `ms2rescore_rs.AnnotatedMS2Spectrum` imported but unused help: Remove unused import: `ms2rescore_rs.AnnotatedMS2Spectrum`
ruff (F821): docs/source/tutorials/in-depth-python-api.ipynb#L1
docs/source/tutorials/in-depth-python-api.ipynb:1:1: F821 Undefined name `deeplc`
ruff (F821): docs/source/tutorials/in-depth-python-api.ipynb#L1
docs/source/tutorials/in-depth-python-api.ipynb:1:1: F821 Undefined name `deeplc`
check-python-package
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@v4, astral-sh/setup-uv@v6. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/